STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HERPUD2HERPUD family member 2. (402 aa)    
Predicted Functional Partners:
ATF4
Activating transcription factor 4.
   
 
 0.595
AMFR
Autocrine motility factor receptor.
    
 
 0.530
SYVN1
Synoviolin 1.
    
 
 0.530
OGFOD1
2-oxoglutarate and iron dependent oxygenase domain containing 1.
      
 0.489
RNF145
Ring finger protein 145.
    
 
 0.450
RNF139
Ring finger protein 139.
    
 
 0.420
LNP1
Leukemia NUP98 fusion partner 1.
    
 
 0.420
TMUB2
Transmembrane and ubiquitin like domain containing 2.
      
 0.418
Your Current Organism:
Tupaia belangeri
NCBI taxonomy Id: 37347
Other names: T. belangeri, Tupaia glis belangeri, common tree shrew, northern tree shrew
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.