STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS13AVacuolar protein sorting 13 homolog A. (3165 aa)    
Predicted Functional Partners:
DNAJC6
DnaJ heat shock protein family (Hsp40) member C6.
    
 
 0.637
VPS35
VPS35 retromer complex component.
   
 
 0.624
VPS13B
Vacuolar protein sorting 13 homolog B.
   
  
0.557
ATP13A2
ATPase cation transporting 13A2.
   
 
 0.527
SYNJ1
Synaptojanin 1.
    
 
 0.517
PDZD8
PDZ domain containing 8.
      
 0.511
ENSTBEP00000002838
annotation not available
    
   0.502
SYNJ2
Synaptojanin 2.
    
 
 0.469
LGALS12
Galectin 12.
   
 
 0.468
ENSTBEP00000015179
annotation not available
   
 
 0.468
Your Current Organism:
Tupaia belangeri
NCBI taxonomy Id: 37347
Other names: T. belangeri, Tupaia glis belangeri, common tree shrew, northern tree shrew
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.