STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF40Ring finger protein 40. (997 aa)    
Predicted Functional Partners:
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.993
UBE2B
Ubiquitin conjugating enzyme E2 B.
    
 0.962
UBE2A
Ubiquitin conjugating enzyme E2 A.
    
 0.962
ENSTBEP00000009585
annotation not available
    
 0.923
CDC73
Cell division cycle 73.
   
 0.885
PAF1
PAF1 homolog, Paf1/RNA polymerase II complex component.
    
 0.875
WAC
WW domain containing adaptor with coiled-coil.
   
 0.873
CTR9
CTR9 homolog, Paf1/RNA polymerase II complex component.
   
 0.831
SETD2
SET domain containing 2, histone lysine methyltransferase.
   
 
 0.793
ENSTBEP00000015385
annotation not available
   
 0.781
Your Current Organism:
Tupaia belangeri
NCBI taxonomy Id: 37347
Other names: T. belangeri, Tupaia glis belangeri, common tree shrew, northern tree shrew
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.