HS6ST2 protein (Tupaia belangeri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

HS6ST2

Heparan sulfate 6-O-sulfotransferase 2. (461 aa)

Predicted Functional Partners:

SDC2

0.655

SDC1

0.615

EGFLAM

0.562

GLCE

0.535

GPC4

0.521

ENSTBEP00000010398

0.521

ENSTBEP00000011528

0.521

GPC6

0.521

SDC3

0.512

GPC5

0.511

Your Current Organism:

Tupaia belangeri

NCBI taxonomy Id: 37347
Other names: T. belangeri, Tupaia glis belangeri, common tree shrew, northern tree shrew

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EGFLAM	ENSTBEP00000010398	ENSTBEP00000002773	ENSTBEP00000010398	EGF like, fibronectin type III and laminin G domains.	annotation not available	0.687
EGFLAM	ENSTBEP00000011528	ENSTBEP00000002773	ENSTBEP00000011528	EGF like, fibronectin type III and laminin G domains.	annotation not available	0.687
EGFLAM	GPC4	ENSTBEP00000002773	ENSTBEP00000006548	EGF like, fibronectin type III and laminin G domains.	Glypican 4.	0.687
EGFLAM	GPC5	ENSTBEP00000002773	ENSTBEP00000008001	EGF like, fibronectin type III and laminin G domains.	Glypican 5.	0.687
EGFLAM	GPC6	ENSTBEP00000002773	ENSTBEP00000012294	EGF like, fibronectin type III and laminin G domains.	Glypican 6.	0.687
EGFLAM	HS6ST2	ENSTBEP00000002773	ENSTBEP00000013726	EGF like, fibronectin type III and laminin G domains.	Heparan sulfate 6-O-sulfotransferase 2.	0.562
EGFLAM	SDC1	ENSTBEP00000002773	ENSTBEP00000006613	EGF like, fibronectin type III and laminin G domains.	Syndecan 1.	0.791
EGFLAM	SDC2	ENSTBEP00000002773	ENSTBEP00000003039	EGF like, fibronectin type III and laminin G domains.	Syndecan 2.	0.791
EGFLAM	SDC3	ENSTBEP00000002773	ENSTBEP00000004478	EGF like, fibronectin type III and laminin G domains.	Syndecan 3.	0.731
ENSTBEP00000010398	EGFLAM	ENSTBEP00000010398	ENSTBEP00000002773	annotation not available	EGF like, fibronectin type III and laminin G domains.	0.687
ENSTBEP00000010398	ENSTBEP00000011528	ENSTBEP00000010398	ENSTBEP00000011528	annotation not available	annotation not available	0.410
ENSTBEP00000010398	GLCE	ENSTBEP00000010398	ENSTBEP00000005603	annotation not available	Glucuronic acid epimerase.	0.496
ENSTBEP00000010398	GPC5	ENSTBEP00000010398	ENSTBEP00000008001	annotation not available	Glypican 5.	0.586
ENSTBEP00000010398	HS6ST2	ENSTBEP00000010398	ENSTBEP00000013726	annotation not available	Heparan sulfate 6-O-sulfotransferase 2.	0.521
ENSTBEP00000010398	SDC1	ENSTBEP00000010398	ENSTBEP00000006613	annotation not available	Syndecan 1.	0.931
ENSTBEP00000010398	SDC2	ENSTBEP00000010398	ENSTBEP00000003039	annotation not available	Syndecan 2.	0.922
ENSTBEP00000010398	SDC3	ENSTBEP00000010398	ENSTBEP00000004478	annotation not available	Syndecan 3.	0.563
ENSTBEP00000011528	EGFLAM	ENSTBEP00000011528	ENSTBEP00000002773	annotation not available	EGF like, fibronectin type III and laminin G domains.	0.687
ENSTBEP00000011528	ENSTBEP00000010398	ENSTBEP00000011528	ENSTBEP00000010398	annotation not available	annotation not available	0.410
ENSTBEP00000011528	GLCE	ENSTBEP00000011528	ENSTBEP00000005603	annotation not available	Glucuronic acid epimerase.	0.496