STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBRA_000234Uncharacterized protein; Belongs to the AAA ATPase family. (459 aa)    
Predicted Functional Partners:
PBRA_003968
Vta1 domain-containing protein.
   
 0.973
PBRA_005319
Uncharacterized protein.
    
 0.972
PBRA_005930
Uncharacterized protein.
    
 0.972
PBRA_002518
Uncharacterized protein.
    
 0.972
PBRA_000160
Uncharacterized protein.
   
 0.957
PBRA_003678
Uncharacterized protein.
   
 0.906
PBRA_007371
Uncharacterized protein.
   
 0.906
PBRA_006229
Uncharacterized protein.
   
 0.903
PBRA_004497
F-box domain-containing protein.
   
 0.865
PBRA_006308
Uncharacterized protein.
   
 0.783
Your Current Organism:
Plasmodiophora brassicae
NCBI taxonomy Id: 37360
Other names: P. brassicae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.