STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBRA_004563Spt4 domain-containing protein. (101 aa)    
Predicted Functional Partners:
PBRA_004367
Transcription elongation factor SPT5.
    
 0.999
PBRA_003327
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.998
PBRA_001606
RPOLD domain-containing protein.
   
 0.997
PBRA_002688
Uncharacterized protein.
   
 0.997
PBRA_003923
Uncharacterized protein.
    
 0.996
PBRA_005671
Uncharacterized protein.
    
 0.996
PBRA_002235
RPOL4c domain-containing protein.
   
 0.996
PBRA_005763
Uncharacterized protein.
   
 0.995
PBRA_008676
TFIIS-type domain-containing protein.
   
 0.995
PBRA_006589
RNA_pol_L_2 domain-containing protein.
   
 0.994
Your Current Organism:
Plasmodiophora brassicae
NCBI taxonomy Id: 37360
Other names: P. brassicae
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