PBRA_004694 protein (Plasmodiophora brassicae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PBRA_004694

Tr-type G domain-containing protein. (546 aa)

Predicted Functional Partners:

PBRA_004759

0.895

PBRA_003163

0.892

PBRA_002233

0.891

PBRA_004513

0.878

PBRA_006916

0.863

PBRA_008963

0.856

PBRA_007891

0.826

PBRA_000625

0.825

PBRA_003290

0.819

PBRA_000010

0.810

Your Current Organism:

Plasmodiophora brassicae

NCBI taxonomy Id: 37360
Other names: P. brassicae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PBRA_000010	PBRA_000625	A0A0G4IGJ5	A0A0G4IPZ6	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
PBRA_000010	PBRA_002233	A0A0G4IGJ5	A0A0G4J2U5	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
PBRA_000010	PBRA_003163	A0A0G4IGJ5	A0A0G4J717	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.	KH type-2 domain-containing protein.	0.999
PBRA_000010	PBRA_003290	A0A0G4IGJ5	A0A0G4J7V8	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.999
PBRA_000010	PBRA_004694	A0A0G4IGJ5	A0A0G4ILG2	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.	Tr-type G domain-containing protein.	0.810
PBRA_000010	PBRA_004759	A0A0G4IGJ5	A0A0G4ILQ2	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.	Ribosomal_S10 domain-containing protein.	0.999
PBRA_000010	PBRA_006916	A0A0G4IGJ5	A0A0G4IU91	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.	Ribos_L4_asso_C domain-containing protein.	0.999
PBRA_000010	PBRA_007891	A0A0G4IGJ5	A0A0G4IY60	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.998
PBRA_000010	PBRA_008963	A0A0G4IGJ5	A0A0G4J4S6	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.	Ribosomal_L18_c domain-containing protein.	0.999
PBRA_000625	PBRA_000010	A0A0G4IPZ6	A0A0G4IGJ5	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.999
PBRA_000625	PBRA_002233	A0A0G4IPZ6	A0A0G4J2U5	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
PBRA_000625	PBRA_003163	A0A0G4IPZ6	A0A0G4J717	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	KH type-2 domain-containing protein.	0.999
PBRA_000625	PBRA_003290	A0A0G4IPZ6	A0A0G4J7V8	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.999
PBRA_000625	PBRA_004513	A0A0G4IPZ6	A0A0G4IL26	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	eRF1_1 domain-containing protein.	0.830
PBRA_000625	PBRA_004694	A0A0G4IPZ6	A0A0G4ILG2	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Tr-type G domain-containing protein.	0.825
PBRA_000625	PBRA_004759	A0A0G4IPZ6	A0A0G4ILQ2	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Ribosomal_S10 domain-containing protein.	0.999
PBRA_000625	PBRA_006916	A0A0G4IPZ6	A0A0G4IU91	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Ribos_L4_asso_C domain-containing protein.	0.999
PBRA_000625	PBRA_007891	A0A0G4IPZ6	A0A0G4IY60	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.999
PBRA_000625	PBRA_008963	A0A0G4IPZ6	A0A0G4J4S6	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	Ribosomal_L18_c domain-containing protein.	0.999
PBRA_002233	PBRA_000010	A0A0G4J2U5	A0A0G4IGJ5	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.999