STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBRA_004816Uncharacterized protein. (256 aa)    
Predicted Functional Partners:
PBRA_006445
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.997
PBRA_003333
Uncharacterized protein.
   
 
 0.956
PBRA_009668
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
 
 0.945
PBRA_008496
Uncharacterized protein.
   
 0.940
PBRA_003466
Utp12 domain-containing protein.
   
 
 0.940
PBRA_009062
Sas10 domain-containing protein.
   
 
 0.909
PBRA_007006
S4 RNA-binding domain-containing protein.
   
 0.901
PBRA_005952
Kri1_C domain-containing protein.
   
 
 0.886
PBRA_003766
Uncharacterized protein.
   
 
 0.884
PBRA_001089
WD_REPEATS_REGION domain-containing protein.
   
  0.878
Your Current Organism:
Plasmodiophora brassicae
NCBI taxonomy Id: 37360
Other names: P. brassicae
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