STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBRA_004981Uncharacterized protein. (196 aa)    
Predicted Functional Partners:
PBRA_003531
TPR_REGION domain-containing protein.
   
 0.977
PBRA_004792
EMC1_C domain-containing protein.
    
 0.957
PBRA_006181
ER membrane protein complex subunit 3.
    
 
 0.940
PBRA_006165
Uncharacterized protein.
   
 
 0.938
PBRA_008723
Uncharacterized protein.
   
 0.898
PBRA_002624
Uncharacterized protein.
    
 
 0.867
PBRA_003093
DUF2012 domain-containing protein.
    
 
 0.849
PBRA_006886
Uncharacterized protein.
    
 
 0.842
PBRA_004118
DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family.
      
 0.445
PBRA_005841
Serine/threonine-protein phosphatase.
    
 
 0.420
Your Current Organism:
Plasmodiophora brassicae
NCBI taxonomy Id: 37360
Other names: P. brassicae
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