STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBRA_005283Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (795 aa)    
Predicted Functional Partners:
PBRA_001171
Ribosomal_L18e/L15P domain-containing protein.
 
 
 
 0.715
PBRA_007068
Ribosomal_L14e domain-containing protein.
   
 
 0.685
PBRA_001779
KOW domain-containing protein.
   
 
 0.678
PBRA_000354
Ribosomal_L28e domain-containing protein.
   
   0.649
PBRA_002262
60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.
   
   0.648
PBRA_005315
Ribosomal_L2_C domain-containing protein.
   
 
 0.646
PBRA_000875
Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family.
   
   0.646
PBRA_001777
Uncharacterized protein.
   
 
 0.637
PBRA_004785
40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.
   
   0.628
PBRA_004439
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
     
 0.627
Your Current Organism:
Plasmodiophora brassicae
NCBI taxonomy Id: 37360
Other names: P. brassicae
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.