STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBRA_005602Aminotran_1_2 domain-containing protein. (466 aa)    
Predicted Functional Partners:
PBRA_008742
Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.
    
 0.865
PBRA_005314
Uncharacterized protein.
     
 0.812
PBRA_005559
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.
  
 0.780
PBRA_005963
Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.
  
 
 0.769
PBRA_006270
t-SNARE coiled-coil homology domain-containing protein.
  
 
 0.756
PBRA_002918
PKS_ER domain-containing protein.
 
 
 0.756
PBRA_005685
NAD_binding_2 domain-containing protein.
    
 0.752
PBRA_004477
Stress-response A/B barrel domain-containing protein.
    
 0.736
PBRA_002216
Aminotran_1_2 domain-containing protein.
  
  
 
0.728
PBRA_006519
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
  
 
 0.727
Your Current Organism:
Plasmodiophora brassicae
NCBI taxonomy Id: 37360
Other names: P. brassicae
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