PBRA_000536 protein (Plasmodiophora brassicae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PBRA_000536

t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (354 aa)

Predicted Functional Partners:

PBRA_000205

0.992

PBRA_002909

0.895

PBRA_003906

0.892

PBRA_006783

0.892

PBRA_000082

0.891

PBRA_001264

0.891

PBRA_006327

0.829

PBRA_003569

0.818

PBRA_001309

0.779

PBRA_002827

0.779

Your Current Organism:

Plasmodiophora brassicae

NCBI taxonomy Id: 37360
Other names: P. brassicae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PBRA_000082	PBRA_000536	A0A0G4IGV0	A0A0G4IPP2	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.891
PBRA_000082	PBRA_001264	A0A0G4IGV0	A0A0G4IVI3	t-SNARE coiled-coil homology domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.998
PBRA_000082	PBRA_001309	A0A0G4IGV0	A0A0G4IVM4	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.849
PBRA_000082	PBRA_002827	A0A0G4IGV0	A0A0G4J5L8	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.849
PBRA_000082	PBRA_002909	A0A0G4IGV0	A0A0G4J5Z0	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.981
PBRA_000082	PBRA_003569	A0A0G4IGV0	A0A0G4IHQ1	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.914
PBRA_000082	PBRA_006327	A0A0G4IGV0	A0A0G4IS92	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.940
PBRA_000205	PBRA_000536	A0A0G4IH43	A0A0G4IPP2	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.992
PBRA_000205	PBRA_003906	A0A0G4IH43	A0A0G4IJ86	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.992
PBRA_000205	PBRA_006783	A0A0G4IH43	A0A0G4IU56	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.992
PBRA_000536	PBRA_000082	A0A0G4IPP2	A0A0G4IGV0	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	t-SNARE coiled-coil homology domain-containing protein.	0.891
PBRA_000536	PBRA_000205	A0A0G4IPP2	A0A0G4IH43	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.992
PBRA_000536	PBRA_001264	A0A0G4IPP2	A0A0G4IVI3	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	V-SNARE coiled-coil homology domain-containing protein.	0.891
PBRA_000536	PBRA_001309	A0A0G4IPP2	A0A0G4IVM4	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.779
PBRA_000536	PBRA_002827	A0A0G4IPP2	A0A0G4J5L8	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.779
PBRA_000536	PBRA_002909	A0A0G4IPP2	A0A0G4J5Z0	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.895
PBRA_000536	PBRA_003569	A0A0G4IPP2	A0A0G4IHQ1	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.818
PBRA_000536	PBRA_003906	A0A0G4IPP2	A0A0G4IJ86	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.892
PBRA_000536	PBRA_006327	A0A0G4IPP2	A0A0G4IS92	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein.	0.829
PBRA_000536	PBRA_006783	A0A0G4IPP2	A0A0G4IU56	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein; Belongs to the peptidase C1 family.	0.892