PBRA_005714 protein (Plasmodiophora brassicae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PBRA_005714

Uncharacterized protein. (311 aa)

Predicted Functional Partners:

PBRA_002939

0.655

PBRA_007012

0.508

PBRA_003866

0.502

PBRA_001413

0.463

PBRA_007277

0.447

PBRA_008497

0.444

PBRA_009418

0.430

Your Current Organism:

Plasmodiophora brassicae

NCBI taxonomy Id: 37360
Other names: P. brassicae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PBRA_001413	PBRA_005714	A0A0G4IZ21	A0A0G4IPR2	NADPH-dependent diflavin oxidoreductase 1; Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis. Transfers electrons from NADPH to the Fe-S cluster of the anamorsin/DRE2 homolog. Belongs to the NADPH-dependent diflavin oxidoreductase NDOR1 family. In the N-terminal section; belongs to the flavodoxin family.	Uncharacterized protein.	0.463
PBRA_002939	PBRA_005714	A0A0G4J757	A0A0G4IPR2	Uncharacterized protein.	Uncharacterized protein.	0.655
PBRA_002939	PBRA_007012	A0A0G4J757	A0A0G4IU73	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.998
PBRA_002939	PBRA_007277	A0A0G4J757	A0A0G4IWK9	Uncharacterized protein.	Uncharacterized protein.	0.999
PBRA_002939	PBRA_009418	A0A0G4J757	A0A0G4J7D9	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.667
PBRA_003866	PBRA_005714	A0A0G4IJ46	A0A0G4IPR2	Trehalase.	Uncharacterized protein.	0.502
PBRA_005714	PBRA_001413	A0A0G4IPR2	A0A0G4IZ21	Uncharacterized protein.	NADPH-dependent diflavin oxidoreductase 1; Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis. Transfers electrons from NADPH to the Fe-S cluster of the anamorsin/DRE2 homolog. Belongs to the NADPH-dependent diflavin oxidoreductase NDOR1 family. In the N-terminal section; belongs to the flavodoxin family.	0.463
PBRA_005714	PBRA_002939	A0A0G4IPR2	A0A0G4J757	Uncharacterized protein.	Uncharacterized protein.	0.655
PBRA_005714	PBRA_003866	A0A0G4IPR2	A0A0G4IJ46	Uncharacterized protein.	Trehalase.	0.502
PBRA_005714	PBRA_007012	A0A0G4IPR2	A0A0G4IU73	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.508
PBRA_005714	PBRA_007277	A0A0G4IPR2	A0A0G4IWK9	Uncharacterized protein.	Uncharacterized protein.	0.447
PBRA_005714	PBRA_008497	A0A0G4IPR2	A0A0G4J0V4	Uncharacterized protein.	Uncharacterized protein.	0.444
PBRA_005714	PBRA_009418	A0A0G4IPR2	A0A0G4J7D9	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.430
PBRA_007012	PBRA_002939	A0A0G4IU73	A0A0G4J757	Nudix hydrolase domain-containing protein.	Uncharacterized protein.	0.998
PBRA_007012	PBRA_005714	A0A0G4IU73	A0A0G4IPR2	Nudix hydrolase domain-containing protein.	Uncharacterized protein.	0.508
PBRA_007012	PBRA_007277	A0A0G4IU73	A0A0G4IWK9	Nudix hydrolase domain-containing protein.	Uncharacterized protein.	0.999
PBRA_007012	PBRA_009418	A0A0G4IU73	A0A0G4J7D9	Nudix hydrolase domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.998
PBRA_007277	PBRA_002939	A0A0G4IWK9	A0A0G4J757	Uncharacterized protein.	Uncharacterized protein.	0.999
PBRA_007277	PBRA_005714	A0A0G4IWK9	A0A0G4IPR2	Uncharacterized protein.	Uncharacterized protein.	0.447
PBRA_007277	PBRA_007012	A0A0G4IWK9	A0A0G4IU73	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.999