STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBRA_006168GH16 domain-containing protein. (354 aa)    
Predicted Functional Partners:
PBRA_005045
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.716
PBRA_008950
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.714
PBRA_008130
Uncharacterized protein.
    
 
 0.710
PBRA_001264
V-SNARE coiled-coil homology domain-containing protein.
    
 0.668
PBRA_002303
Uncharacterized protein.
    
 0.659
PBRA_004297
Sortilin.
    
 0.650
PBRA_002457
Uncharacterized protein.
    
 0.586
PBRA_008989
Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 0.586
PBRA_002453
Uncharacterized protein.
    
 0.586
PBRA_008266
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.582
Your Current Organism:
Plasmodiophora brassicae
NCBI taxonomy Id: 37360
Other names: P. brassicae
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