STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBRA_006348GH16 domain-containing protein. (447 aa)    
Predicted Functional Partners:
PBRA_002349
Ubiquitin-like domain-containing protein.
    
 0.766
PBRA_007197
Uncharacterized protein.
    
 0.706
PBRA_003680
Uncharacterized protein.
    
 0.690
PBRA_007838
Uncharacterized protein.
    
 0.690
PBRA_006050
Uncharacterized protein.
    
 0.681
PBRA_006309
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.658
PBRA_008025
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.658
PBRA_007703
Sde2_N_Ubi domain-containing protein.
    
 0.654
PBRA_004662
PI3K/PI4K domain-containing protein.
    
 0.653
PBRA_005110
Ubiquitin-like domain-containing protein.
    
 0.653
Your Current Organism:
Plasmodiophora brassicae
NCBI taxonomy Id: 37360
Other names: P. brassicae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.