PBRA_006692 protein (Plasmodiophora brassicae)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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protein homology

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[Homology]

Score

PBRA_006692

Uncharacterized protein. (697 aa)

Predicted Functional Partners:

PBRA_006761

0.614

PBRA_003614

0.585

PBRA_005676

0.523

PBRA_006177

0.517

PBRA_004883

0.502

PBRA_007782

0.494

PBRA_001101

0.490

PBRA_001406

0.490

PBRA_008572

0.490

PBRA_004046

0.470

Your Current Organism:

Plasmodiophora brassicae

NCBI taxonomy Id: 37360
Other names: P. brassicae

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PBRA_001101	PBRA_006692	A0A0G4IV91	A0A0G4ITA4	Uncharacterized protein; Belongs to the CDC50/LEM3 family.	Uncharacterized protein.	0.490
PBRA_001406	PBRA_006692	A0A0G4IYL5	A0A0G4ITA4	Uncharacterized protein; Belongs to the CDC50/LEM3 family.	Uncharacterized protein.	0.490
PBRA_003614	PBRA_004883	A0A0G4IHU7	A0A0G4IM94	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit gamma.	0.999
PBRA_003614	PBRA_005676	A0A0G4IHU7	A0A0G4IPD9	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.999
PBRA_003614	PBRA_006692	A0A0G4IHU7	A0A0G4ITA4	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.585
PBRA_003614	PBRA_007782	A0A0G4IHU7	A0A0G4IXH0	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.851
PBRA_004046	PBRA_006692	A0A0G4IJM5	A0A0G4ITA4	Uncharacterized protein.	Uncharacterized protein.	0.470
PBRA_004883	PBRA_003614	A0A0G4IM94	A0A0G4IHU7	ATP synthase subunit gamma.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
PBRA_004883	PBRA_005676	A0A0G4IM94	A0A0G4IPD9	ATP synthase subunit gamma.	Uncharacterized protein.	0.999
PBRA_004883	PBRA_006692	A0A0G4IM94	A0A0G4ITA4	ATP synthase subunit gamma.	Uncharacterized protein.	0.502
PBRA_004883	PBRA_007782	A0A0G4IM94	A0A0G4IXH0	ATP synthase subunit gamma.	Uncharacterized protein.	0.847
PBRA_005676	PBRA_003614	A0A0G4IPD9	A0A0G4IHU7	Uncharacterized protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
PBRA_005676	PBRA_004883	A0A0G4IPD9	A0A0G4IM94	Uncharacterized protein.	ATP synthase subunit gamma.	0.999
PBRA_005676	PBRA_006692	A0A0G4IPD9	A0A0G4ITA4	Uncharacterized protein.	Uncharacterized protein.	0.523
PBRA_005676	PBRA_007782	A0A0G4IPD9	A0A0G4IXH0	Uncharacterized protein.	Uncharacterized protein.	0.739
PBRA_006177	PBRA_006692	A0A0G4IRR2	A0A0G4ITA4	Uncharacterized protein.	Uncharacterized protein.	0.517
PBRA_006692	PBRA_001101	A0A0G4ITA4	A0A0G4IV91	Uncharacterized protein.	Uncharacterized protein; Belongs to the CDC50/LEM3 family.	0.490
PBRA_006692	PBRA_001406	A0A0G4ITA4	A0A0G4IYL5	Uncharacterized protein.	Uncharacterized protein; Belongs to the CDC50/LEM3 family.	0.490
PBRA_006692	PBRA_003614	A0A0G4ITA4	A0A0G4IHU7	Uncharacterized protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.585
PBRA_006692	PBRA_004046	A0A0G4ITA4	A0A0G4IJM5	Uncharacterized protein.	Uncharacterized protein.	0.470

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Network Stats

number of nodes:

11

number of edges:

51

average node degree:

9.27

avg. local clustering coefficient:

0.952

expected number of edges:

45

PPI enrichment p-value:

0.157

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0042128

Nitrate assimilation

2 of 2

2.87

1.01

0.0150

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0008942

Nitrite reductase [NAD(P)H] activity

2 of 2

2.87

1.13

0.0089

GO:0015103

Inorganic anion transmembrane transporter activity

2 of 13

2.06

0.81

0.0309

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:4791

Mixed, incl. Ferredoxin metabolic process, and Nitrate assimilation

6 of 11

2.61

5.45

2.50e-11

CL:4794

Nitrate assimilation, and NADH-rubredoxin oxidoreductase, C-terminal

5 of 5

2.87

5.16

2.33e-10

CL:2614

3-oxoacyl-[acyl-carrier-protein] synthase activity, and Ketoacyl-synthetase C-terminal extension

2 of 11

2.13

0.79

0.0339

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

aori00910

Nitrogen metabolism

6 of 22

2.31

4.92

5.30e-11

aori01120

Microbial metabolism in diverse environments

5 of 344

1.04

0.79

0.0033

aori01100

Metabolic pathways

7 of 1148

0.66

0.46

0.0092

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0009344

Nitrite reductase complex [NAD(P)H]

2 of 2

2.87

1.38

0.0032

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF04324

BFD-like [2Fe-2S] binding domain

2 of 3

2.7

1.01

0.0147

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR041854

BFD-like [2Fe-2S]-binding domain superfamily

2 of 3

2.7

0.91

0.0224

IPR041575

NADH-rubredoxin oxidoreductase, C-terminal

2 of 2

2.87

0.91

0.0224

IPR007419

BFD-like [2Fe-2S]-binding domain

2 of 3

2.7

0.91

0.0224

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