STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBRA_007006S4 RNA-binding domain-containing protein. (183 aa)    
Predicted Functional Partners:
PBRA_004230
U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.
   
  0.999
PBRA_006445
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.999
PBRA_006619
Brix domain-containing protein.
   
 0.999
PBRA_007403
Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.
  
 0.998
PBRA_001401
Uncharacterized protein.
   
 0.998
PBRA_009062
Sas10 domain-containing protein.
   
  0.998
PBRA_001214
Uncharacterized protein.
   
  0.997
PBRA_007891
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.997
PBRA_003857
BP28CT domain-containing protein.
   
  0.996
PBRA_005588
Nop domain-containing protein.
   
 0.996
Your Current Organism:
Plasmodiophora brassicae
NCBI taxonomy Id: 37360
Other names: P. brassicae
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