STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBRA_007134RBR-type E3 ubiquitin transferase. (378 aa)    
Predicted Functional Partners:
PBRA_002349
Ubiquitin-like domain-containing protein.
    
 0.738
PBRA_006309
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.727
PBRA_008025
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.727
PBRA_004204
RBR-type E3 ubiquitin transferase.
  
 
0.712
PBRA_001160
RBR-type E3 ubiquitin transferase.
    
0.685
PBRA_003308
RBR-type E3 ubiquitin transferase.
    
0.685
PBRA_000236
Ubiquitin-like domain-containing protein.
    
  0.673
PBRA_006810
Ubiquitin-like domain-containing protein.
    
  0.673
PBRA_005158
Ubiquitin-like domain-containing protein.
    
 0.672
PBRA_003602
Protein kinase domain-containing protein.
    
 0.657
Your Current Organism:
Plasmodiophora brassicae
NCBI taxonomy Id: 37360
Other names: P. brassicae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.