STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBRA_001262Amidohydro-rel domain-containing protein; Belongs to the metallo-dependent hydrolases superfamily. (364 aa)    
Predicted Functional Partners:
PBRA_001928
3-hydroxyanthranilate 3,4-dioxygenase; Catalyzes the oxidative ring opening of 3-hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate; Belongs to the 3-HAO family.
  
 
 0.925
PBRA_000615
Uncharacterized protein.
    
 0.832
PBRA_005559
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.
   
 
 0.754
PBRA_006270
t-SNARE coiled-coil homology domain-containing protein.
  
 
  0.744
PBRA_002918
PKS_ER domain-containing protein.
  
 
  0.744
PBRA_000107
Uncharacterized protein.
    
 0.733
PBRA_000805
ULP_PROTEASE domain-containing protein.
    
 0.733
PBRA_000988
Uncharacterized protein.
 
  
 0.733
PBRA_009227
Uncharacterized protein.
    
 0.733
PBRA_008287
Uncharacterized protein.
    
  0.713
Your Current Organism:
Plasmodiophora brassicae
NCBI taxonomy Id: 37360
Other names: P. brassicae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.