PBRA_007457 protein (Plasmodiophora brassicae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PBRA_007457

Uncharacterized protein. (765 aa)

Predicted Functional Partners:

PBRA_001223

0.738

PBRA_000207

0.688

PBRA_002168

0.688

PBRA_008875

0.688

PBRA_007197

0.662

PBRA_004425

0.650

PBRA_001544

0.638

PBRA_006712

0.636

PBRA_005751

0.633

PBRA_001928

0.625

Your Current Organism:

Plasmodiophora brassicae

NCBI taxonomy Id: 37360
Other names: P. brassicae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PBRA_000207	PBRA_004425	A0A0G4IH59	A0A0G4IKU7	Uncharacterized protein.	Uncharacterized protein.	0.725
PBRA_000207	PBRA_007197	A0A0G4IH59	A0A0G4IUR3	Uncharacterized protein.	Uncharacterized protein.	0.521
PBRA_000207	PBRA_007457	A0A0G4IH59	A0A0G4IX87	Uncharacterized protein.	Uncharacterized protein.	0.688
PBRA_001223	PBRA_006712	A0A0G4IVQ0	A0A0G4ITI4	Aspartate aminotransferase.	Uncharacterized protein.	0.768
PBRA_001223	PBRA_007197	A0A0G4IVQ0	A0A0G4IUR3	Aspartate aminotransferase.	Uncharacterized protein.	0.439
PBRA_001223	PBRA_007457	A0A0G4IVQ0	A0A0G4IX87	Aspartate aminotransferase.	Uncharacterized protein.	0.738
PBRA_001544	PBRA_007457	A0A0G4IZC3	A0A0G4IX87	Uncharacterized protein.	Uncharacterized protein.	0.638
PBRA_001928	PBRA_005751	A0A0G4J1D2	A0A0G4IPL0	3-hydroxyanthranilate 3,4-dioxygenase; Catalyzes the oxidative ring opening of 3-hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate; Belongs to the 3-HAO family.	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.	0.731
PBRA_001928	PBRA_006712	A0A0G4J1D2	A0A0G4ITI4	3-hydroxyanthranilate 3,4-dioxygenase; Catalyzes the oxidative ring opening of 3-hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate; Belongs to the 3-HAO family.	Uncharacterized protein.	0.406
PBRA_001928	PBRA_007457	A0A0G4J1D2	A0A0G4IX87	3-hydroxyanthranilate 3,4-dioxygenase; Catalyzes the oxidative ring opening of 3-hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate; Belongs to the 3-HAO family.	Uncharacterized protein.	0.625
PBRA_002168	PBRA_004425	A0A0G4J203	A0A0G4IKU7	Fe2OG dioxygenase domain-containing protein.	Uncharacterized protein.	0.725
PBRA_002168	PBRA_007197	A0A0G4J203	A0A0G4IUR3	Fe2OG dioxygenase domain-containing protein.	Uncharacterized protein.	0.521
PBRA_002168	PBRA_007457	A0A0G4J203	A0A0G4IX87	Fe2OG dioxygenase domain-containing protein.	Uncharacterized protein.	0.688
PBRA_004425	PBRA_000207	A0A0G4IKU7	A0A0G4IH59	Uncharacterized protein.	Uncharacterized protein.	0.725
PBRA_004425	PBRA_002168	A0A0G4IKU7	A0A0G4J203	Uncharacterized protein.	Fe2OG dioxygenase domain-containing protein.	0.725
PBRA_004425	PBRA_007197	A0A0G4IKU7	A0A0G4IUR3	Uncharacterized protein.	Uncharacterized protein.	0.792
PBRA_004425	PBRA_007457	A0A0G4IKU7	A0A0G4IX87	Uncharacterized protein.	Uncharacterized protein.	0.650
PBRA_004425	PBRA_008875	A0A0G4IKU7	A0A0G4J4U1	Uncharacterized protein.	Aamy domain-containing protein.	0.725
PBRA_005751	PBRA_001928	A0A0G4IPL0	A0A0G4J1D2	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.	3-hydroxyanthranilate 3,4-dioxygenase; Catalyzes the oxidative ring opening of 3-hydroxyanthranilate to 2-amino-3-carboxymuconate semialdehyde, which spontaneously cyclizes to quinolinate; Belongs to the 3-HAO family.	0.731
PBRA_005751	PBRA_007457	A0A0G4IPL0	A0A0G4IX87	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide.	Uncharacterized protein.	0.633