STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBRA_001863HTH myb-type domain-containing protein. (482 aa)    
Predicted Functional Partners:
PBRA_009042
AAA_23 domain-containing protein.
    
 0.638
PBRA_005258
3'-5' exonuclease domain-containing protein.
    
 0.631
PBRA_005635
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
    
 0.631
PBRA_008413
3'-5' exonuclease domain-containing protein.
    
 0.631
PBRA_001533
Uncharacterized protein.
    
  0.626
PBRA_009181
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
    
  0.604
PBRA_003905
F-box domain-containing protein.
    
 0.550
PBRA_003992
Uncharacterized protein.
    
 0.550
PBRA_005760
Uncharacterized protein.
    
 0.550
PBRA_006009
Uncharacterized protein.
    
 0.550
Your Current Organism:
Plasmodiophora brassicae
NCBI taxonomy Id: 37360
Other names: P. brassicae
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