STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBRA_002039Glyco_hydro_114 domain-containing protein. (328 aa)    
Predicted Functional Partners:
PBRA_000310
Uncharacterized protein.
    
 0.738
PBRA_004937
Small nuclear ribonucleoprotein Sm D2.
    
 0.711
PBRA_000880
DNA polymerase.
   
 0.702
PBRA_008257
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.700
PBRA_003384
Uncharacterized protein.
    
 0.697
PBRA_007608
ERCC4 domain-containing protein.
    
 0.687
PBRA_003752
Sm domain-containing protein.
    
  0.684
PBRA_001619
Small nuclear ribonucleoprotein G.
    
  0.676
PBRA_007984
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.669
PBRA_008205
Sm domain-containing protein.
    
 0.669
Your Current Organism:
Plasmodiophora brassicae
NCBI taxonomy Id: 37360
Other names: P. brassicae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.