STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBRA_008811Uncharacterized protein. (548 aa)    
Predicted Functional Partners:
PBRA_001157
Structural maintenance of chromosomes protein.
   
 0.970
PBRA_008484
Structural maintenance of chromosomes protein.
   
 0.954
PBRA_005453
SCD domain-containing protein.
   
 0.950
PBRA_009171
Uncharacterized protein.
   
 0.938
PBRA_009156
UmuC domain-containing protein.
   
 0.933
PBRA_008878
Sister chromatid cohesion protein.
   
 0.932
PBRA_002319
Serine/threonine-protein kinase PLK.
   
 0.893
PBRA_001347
SMC_N domain-containing protein.
   
 0.851
PBRA_004202
Structural maintenance of chromosomes protein.
   
 0.838
PBRA_007484
Peptidase C50 domain-containing protein.
   
 0.836
Your Current Organism:
Plasmodiophora brassicae
NCBI taxonomy Id: 37360
Other names: P. brassicae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.