STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBRA_008821PPM-type phosphatase domain-containing protein. (411 aa)    
Predicted Functional Partners:
PBRA_006309
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.619
PBRA_008025
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.619
PBRA_003966
RING-type domain-containing protein.
   
 0.615
PBRA_008895
Uncharacterized protein.
   
 0.615
PBRA_002698
RING-type domain-containing protein.
   
 0.615
PBRA_000543
Transket_pyr domain-containing protein.
   
 0.614
PBRA_005622
2-oxoisovalerate dehydrogenase subunit alpha; The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
   
 0.607
PBRA_000674
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 0.604
PBRA_000473
ANK_REP_REGION domain-containing protein.
   
 0.600
PBRA_006363
ANK_REP_REGION domain-containing protein.
   
 0.600
Your Current Organism:
Plasmodiophora brassicae
NCBI taxonomy Id: 37360
Other names: P. brassicae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.