STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBRA_002451NEDD8-activating enzyme E1 regulatory subunit. (593 aa)    
Predicted Functional Partners:
PBRA_008671
ThiF domain-containing protein.
   
 0.999
PBRA_005158
Ubiquitin-like domain-containing protein.
    
 0.981
PBRA_001675
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.976
PBRA_005516
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
 
  
   0.875
PBRA_003781
Uncharacterized protein.
  
 0.818
PBRA_003131
Ubiquitin-like domain-containing protein.
   
 0.814
PBRA_006037
Autophagy-related protein 3.
    
 0.804
PBRA_005981
Ubiquitin-like protein ATG12.
    
 0.792
PBRA_000680
Autophagy-related protein.
   
 0.772
PBRA_001994
Autophagy-related protein.
   
 0.772
Your Current Organism:
Plasmodiophora brassicae
NCBI taxonomy Id: 37360
Other names: P. brassicae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.