PBRA_003007 protein (Plasmodiophora brassicae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PBRA_003007

FAD-binding PCMH-type domain-containing protein. (474 aa)

Predicted Functional Partners:

PBRA_004032

0.823

PBRA_006457

0.803

PBRA_005279

0.751

PBRA_002033

0.691

PBRA_005362

0.689

PBRA_007747

0.646

PBRA_006953

0.636

PBRA_009489

0.634

PBRA_004794

0.622

PBRA_007820

0.621

Your Current Organism:

Plasmodiophora brassicae

NCBI taxonomy Id: 37360
Other names: P. brassicae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PBRA_002033	PBRA_003007	A0A0G4J1N4	A0A0G4J6N0	Uncharacterized protein.	FAD-binding PCMH-type domain-containing protein.	0.691
PBRA_002033	PBRA_005279	A0A0G4J1N4	A0A0G4IND1	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome b5 family.	0.716
PBRA_002033	PBRA_005362	A0A0G4J1N4	A0A0G4IN73	Uncharacterized protein.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.996
PBRA_002033	PBRA_006457	A0A0G4J1N4	A0A0G4ISK7	Uncharacterized protein.	FMN hydroxy acid dehydrogenase domain-containing protein.	0.839
PBRA_002033	PBRA_007747	A0A0G4J1N4	A0A0G4IXD5	Uncharacterized protein.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.702
PBRA_003007	PBRA_002033	A0A0G4J6N0	A0A0G4J1N4	FAD-binding PCMH-type domain-containing protein.	Uncharacterized protein.	0.691
PBRA_003007	PBRA_004032	A0A0G4J6N0	A0A0G4IJ47	FAD-binding PCMH-type domain-containing protein.	Uncharacterized protein.	0.823
PBRA_003007	PBRA_004794	A0A0G4J6N0	A0A0G4ILS9	FAD-binding PCMH-type domain-containing protein.	PlsC domain-containing protein.	0.622
PBRA_003007	PBRA_005279	A0A0G4J6N0	A0A0G4IND1	FAD-binding PCMH-type domain-containing protein.	Uncharacterized protein; Belongs to the cytochrome b5 family.	0.751
PBRA_003007	PBRA_005362	A0A0G4J6N0	A0A0G4IN73	FAD-binding PCMH-type domain-containing protein.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.689
PBRA_003007	PBRA_006457	A0A0G4J6N0	A0A0G4ISK7	FAD-binding PCMH-type domain-containing protein.	FMN hydroxy acid dehydrogenase domain-containing protein.	0.803
PBRA_003007	PBRA_006953	A0A0G4J6N0	A0A0G4IUN1	FAD-binding PCMH-type domain-containing protein.	Uncharacterized protein.	0.636
PBRA_003007	PBRA_007747	A0A0G4J6N0	A0A0G4IXD5	FAD-binding PCMH-type domain-containing protein.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.646
PBRA_003007	PBRA_007820	A0A0G4J6N0	A0A0G4IYE3	FAD-binding PCMH-type domain-containing protein.	Malate synthase; Belongs to the malate synthase family.	0.621
PBRA_003007	PBRA_009489	A0A0G4J6N0	A0A0G4J8F9	FAD-binding PCMH-type domain-containing protein.	Uncharacterized protein.	0.634
PBRA_004032	PBRA_003007	A0A0G4IJ47	A0A0G4J6N0	Uncharacterized protein.	FAD-binding PCMH-type domain-containing protein.	0.823
PBRA_004032	PBRA_005279	A0A0G4IJ47	A0A0G4IND1	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome b5 family.	0.598
PBRA_004032	PBRA_005362	A0A0G4IJ47	A0A0G4IN73	Uncharacterized protein.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.887
PBRA_004032	PBRA_006457	A0A0G4IJ47	A0A0G4ISK7	Uncharacterized protein.	FMN hydroxy acid dehydrogenase domain-containing protein.	0.969
PBRA_004032	PBRA_007747	A0A0G4IJ47	A0A0G4IXD5	Uncharacterized protein.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.919