STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBRA_003277Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). (282 aa)    
Predicted Functional Partners:
PBRA_009079
Uncharacterized protein.
  
 
 0.941
PBRA_008963
Ribosomal_L18_c domain-containing protein.
  
 
 0.936
PBRA_003653
Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.
  
   0.928
PBRA_006844
Uncharacterized protein.
  
 
 0.927
PBRA_008652
KOW domain-containing protein.
  
   0.927
PBRA_008276
Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.
  
 
 0.918
PBRA_003163
KH type-2 domain-containing protein.
  
 
 0.911
PBRA_007585
Uncharacterized protein.
  
 
 0.907
PBRA_009540
Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.
  
 
 0.901
PBRA_004955
Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.
  
 
 0.900
Your Current Organism:
Plasmodiophora brassicae
NCBI taxonomy Id: 37360
Other names: P. brassicae
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