STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PBRA_009446Uncharacterized protein. (220 aa)    
Predicted Functional Partners:
PBRA_002768
Uncharacterized protein.
    
 0.924
PBRA_003939
Fe-S_biosyn domain-containing protein.
  
 
 0.851
PBRA_004646
RF_PROK_I domain-containing protein.
  
 
 0.851
PBRA_001905
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.
    
 0.728
PBRA_007579
Uncharacterized protein.
   
 
 0.718
PBRA_004513
eRF1_1 domain-containing protein.
    
 0.716
PBRA_004313
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
    
 0.700
PBRA_006519
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
    
 0.609
PBRA_006960
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
    
 0.609
PBRA_004966
Adenosylhomocysteinase.
   
 
  0.601
Your Current Organism:
Plasmodiophora brassicae
NCBI taxonomy Id: 37360
Other names: P. brassicae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.