PBRA_003452 protein (Plasmodiophora brassicae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PBRA_003452

Flavoprotein domain-containing protein. (205 aa)

Predicted Functional Partners:

PBRA_002943

0.974

PBRA_004603

0.886

PBRA_005523

0.881

PBRA_001254

0.875

PBRA_000565

0.849

PBRA_003513

0.849

PBRA_008438

0.800

PBRA_004449

0.799

PBRA_003476

0.766

PBRA_008272

0.729

Your Current Organism:

Plasmodiophora brassicae

NCBI taxonomy Id: 37360
Other names: P. brassicae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PBRA_000565	PBRA_002943	A0A0G4IPU6	A0A0G4J6H0	dUTPase domain-containing protein.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.951
PBRA_000565	PBRA_003452	A0A0G4IPU6	A0A0G4J8E3	dUTPase domain-containing protein.	Flavoprotein domain-containing protein.	0.849
PBRA_000565	PBRA_004603	A0A0G4IPU6	A0A0G4IL65	dUTPase domain-containing protein.	Uncharacterized protein.	0.605
PBRA_000565	PBRA_005523	A0A0G4IPU6	A0A0G4IP24	dUTPase domain-containing protein.	Uncharacterized protein.	0.806
PBRA_001254	PBRA_003452	A0A0G4IVH4	A0A0G4J8E3	CTP_transf_like domain-containing protein.	Flavoprotein domain-containing protein.	0.875
PBRA_001254	PBRA_004603	A0A0G4IVH4	A0A0G4IL65	CTP_transf_like domain-containing protein.	Uncharacterized protein.	0.876
PBRA_001254	PBRA_005523	A0A0G4IVH4	A0A0G4IP24	CTP_transf_like domain-containing protein.	Uncharacterized protein.	0.871
PBRA_002943	PBRA_000565	A0A0G4J6H0	A0A0G4IPU6	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	dUTPase domain-containing protein.	0.951
PBRA_002943	PBRA_003452	A0A0G4J6H0	A0A0G4J8E3	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	Flavoprotein domain-containing protein.	0.974
PBRA_002943	PBRA_003476	A0A0G4J6H0	A0A0G4J8Y6	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	Uncharacterized protein.	0.918
PBRA_002943	PBRA_003513	A0A0G4J6H0	A0A0G4J942	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.951
PBRA_002943	PBRA_004449	A0A0G4J6H0	A0A0G4IKF2	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.	0.674
PBRA_002943	PBRA_004603	A0A0G4J6H0	A0A0G4IL65	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	Uncharacterized protein.	0.859
PBRA_002943	PBRA_005523	A0A0G4J6H0	A0A0G4IP24	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	Uncharacterized protein.	0.896
PBRA_002943	PBRA_008272	A0A0G4J6H0	A0A0G4J049	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	Uncharacterized protein.	0.889
PBRA_002943	PBRA_008438	A0A0G4J6H0	A0A0G4J1H8	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	Methylenetetrahydrofolate reductase; Belongs to the methylenetetrahydrofolate reductase family.	0.900
PBRA_003452	PBRA_000565	A0A0G4J8E3	A0A0G4IPU6	Flavoprotein domain-containing protein.	dUTPase domain-containing protein.	0.849
PBRA_003452	PBRA_001254	A0A0G4J8E3	A0A0G4IVH4	Flavoprotein domain-containing protein.	CTP_transf_like domain-containing protein.	0.875
PBRA_003452	PBRA_002943	A0A0G4J8E3	A0A0G4J6H0	Flavoprotein domain-containing protein.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.974
PBRA_003452	PBRA_003476	A0A0G4J8E3	A0A0G4J8Y6	Flavoprotein domain-containing protein.	Uncharacterized protein.	0.766