STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS69227.1Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family. (129 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.793
SIS68598.1
RNA polymerase primary sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
 
 0.574
SIS81729.1
Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin).
  
  
 0.571
SIT01400.1
Peroxiredoxin (alkyl hydroperoxide reductase subunit C).
  
  
 0.571
SIT03323.1
Predicted transcriptional regulator, ArsR family.
  
    0.555
SIT12890.1
SWIM zinc finger.
  
    0.555
SIS69210.1
MerC mercury resistance protein.
       0.549
SIS68680.1
Iron (metal) dependent repressor, DtxR family.
  
  
 0.534
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.492
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.485
Your Current Organism:
Chryseobacterium ureilyticum
NCBI taxonomy Id: 373668
Other names: C. ureilyticum, CCUG 52546, CIP 110146, Chryseobacterium sp. F-Fue-04IIIaaaa, Chryseobacterium ureilyticum Herzog et al. 2008 emend. Montero-Calasanz et al. 2014, DSM 18017, strain F-Fue-04IIIaaaa
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