STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS52812.1Starch-binding associating with outer membrane. (529 aa)    
Predicted Functional Partners:
SIS52788.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.962
SIS61766.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.687
SIS97030.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.669
SIT25060.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.633
SIS62758.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.591
SIT16132.1
C-terminal processing protease CtpA/Prc, contains a PDZ domain; Degrades oligopeptides; Belongs to the peptidase S41B family.
  
  0.537
SIT23917.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.508
SIT07709.1
Aspartyl protease.
  
 
  0.496
SIT01113.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.493
SIS86933.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.485
Your Current Organism:
Chryseobacterium ureilyticum
NCBI taxonomy Id: 373668
Other names: C. ureilyticum, CCUG 52546, CIP 110146, Chryseobacterium sp. F-Fue-04IIIaaaa, Chryseobacterium ureilyticum Herzog et al. 2008 emend. Montero-Calasanz et al. 2014, DSM 18017, strain F-Fue-04IIIaaaa
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