STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS64406.1TonB dependent receptor. (588 aa)    
Predicted Functional Partners:
SIS64371.1
Tetratricopeptide repeat-containing protein.
 
     0.927
SIS92761.1
Hypothetical protein.
  
  0.889
SIT16259.1
Protein TonB.
  
  0.848
SIS85861.1
Protein TonB.
  
  0.842
SIT23685.1
Protein TonB.
  
  0.791
SIS85819.1
Lipopolysaccharide biosynthesis regulator YciM, contains six TPR domains and a predicted metal-binding C-terminal domain.
  
     0.769
SIS67051.1
Hypothetical protein.
  
     0.768
SIT14410.1
Protein of unknown function.
  
     0.767
SIT21775.1
Hypothetical protein.
  
     0.767
SIT23809.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.761
Your Current Organism:
Chryseobacterium ureilyticum
NCBI taxonomy Id: 373668
Other names: C. ureilyticum, CCUG 52546, CIP 110146, Chryseobacterium sp. F-Fue-04IIIaaaa, Chryseobacterium ureilyticum Herzog et al. 2008 emend. Montero-Calasanz et al. 2014, DSM 18017, strain F-Fue-04IIIaaaa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.