STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT04998.1Hypothetical protein. (208 aa)    
Predicted Functional Partners:
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.636
SIT04972.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
       0.501
SIT21648.1
Lysophospholipase L1.
    
  0.483
SIT16132.1
C-terminal processing protease CtpA/Prc, contains a PDZ domain; Degrades oligopeptides; Belongs to the peptidase S41B family.
   
  0.440
SIT19431.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family.
    
   0.431
SIS60377.1
Peptidase family S41.
    
  0.429
SIS63543.1
Peptidase family S41.
    
  0.429
SIS64113.1
Peptidase family S41.
    
  0.429
SIS66436.1
Gag-polyprotein putative aspartyl protease.
    
  0.429
SIS78995.1
Peptidase family S41.
    
  0.429
Your Current Organism:
Chryseobacterium ureilyticum
NCBI taxonomy Id: 373668
Other names: C. ureilyticum, CCUG 52546, CIP 110146, Chryseobacterium sp. F-Fue-04IIIaaaa, Chryseobacterium ureilyticum Herzog et al. 2008 emend. Montero-Calasanz et al. 2014, DSM 18017, strain F-Fue-04IIIaaaa
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