STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS76229.1Outer membrane receptor proteins, mostly Fe transport. (812 aa)    
Predicted Functional Partners:
SIS76191.1
Fucose permease.
 
     0.907
SIS76211.1
Alpha,alpha-trehalase.
 
     0.753
SIT27165.1
Protein of unknown function C-terminal.
  
     0.630
SIS76174.1
AraC-type DNA-binding protein.
 
     0.540
SIS74806.1
Starch-binding associating with outer membrane.
  
 
   0.537
SIS64095.1
SusD family protein.
  
 
   0.530
SIS62202.1
Fucose permease.
 
     0.524
SIS93687.1
CarboxypepD_reg-like domain-containing protein.
  
 
   0.509
SIT28345.1
RHS repeat-associated core domain-containing protein.
  
     0.499
SIS93623.1
Curli assembly protein CsgE.
  
     0.481
Your Current Organism:
Chryseobacterium gambrini
NCBI taxonomy Id: 373672
Other names: C. gambrini, CCUG 52549, Chryseobacterium gambrini Herzog et al. 2008 emend. Montero-Calasanz et al. 2014, Chryseobacterium sp. 5-1St1a, DSM 18014, strain 5-1St1a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.