SIS86966.1 protein (Chryseobacterium gambrini)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SIS86966.1

Por secretion system C-terminal sorting domain-containing protein. (759 aa)

Predicted Functional Partners:

SIS86953.1

0.628

SIS54663.1

0.581

SIS95672.1

0.522

SIT25064.1

0.521

SIS82174.1

0.514

SIT08983.1

0.468

SIS71157.1

0.449

SIT18347.1

0.449

SIT24282.1

0.449

SIT21419.1

0.447

Your Current Organism:

Chryseobacterium gambrini

NCBI taxonomy Id: 373672
Other names: C. gambrini, CCUG 52549, Chryseobacterium gambrini Herzog et al. 2008 emend. Montero-Calasanz et al. 2014, Chryseobacterium sp. 5-1St1a, DSM 18014, strain 5-1St1a

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SIS54663.1	SIS86966.1	SAMN05421785_101185	SAMN05421785_103321	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.581
SIS71157.1	SIS86966.1	SAMN05421785_102113	SAMN05421785_103321	Peptidase family S41.	Por secretion system C-terminal sorting domain-containing protein.	0.449
SIS82174.1	SIS86966.1	SAMN05421785_10318	SAMN05421785_103321	Carboxyl-terminal processing protease; Belongs to the peptidase S41A family.	Por secretion system C-terminal sorting domain-containing protein.	0.514
SIS86953.1	SIS86966.1	SAMN05421785_103320	SAMN05421785_103321	Hypothetical protein.	Por secretion system C-terminal sorting domain-containing protein.	0.628
SIS86966.1	SIS54663.1	SAMN05421785_103321	SAMN05421785_101185	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.581
SIS86966.1	SIS71157.1	SAMN05421785_103321	SAMN05421785_102113	Por secretion system C-terminal sorting domain-containing protein.	Peptidase family S41.	0.449
SIS86966.1	SIS82174.1	SAMN05421785_103321	SAMN05421785_10318	Por secretion system C-terminal sorting domain-containing protein.	Carboxyl-terminal processing protease; Belongs to the peptidase S41A family.	0.514
SIS86966.1	SIS86953.1	SAMN05421785_103321	SAMN05421785_103320	Por secretion system C-terminal sorting domain-containing protein.	Hypothetical protein.	0.628
SIS86966.1	SIS95672.1	SAMN05421785_103321	SAMN05421785_104140	Por secretion system C-terminal sorting domain-containing protein.	Aspartyl protease.	0.522
SIS86966.1	SIT08983.1	SAMN05421785_103321	SAMN05421785_106195	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein; Belongs to the peptidase S8 family.	0.468
SIS86966.1	SIT18347.1	SAMN05421785_103321	SAMN05421785_10981	Por secretion system C-terminal sorting domain-containing protein.	Peptidase family S41.	0.449
SIS86966.1	SIT21419.1	SAMN05421785_103321	SAMN05421785_11140	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.447
SIS86966.1	SIT24282.1	SAMN05421785_103321	SAMN05421785_11460	Por secretion system C-terminal sorting domain-containing protein.	C-terminal processing protease CtpA/Prc, contains a PDZ domain.	0.449
SIS86966.1	SIT25064.1	SAMN05421785_103321	SAMN05421785_11566	Por secretion system C-terminal sorting domain-containing protein.	Outer membrane receptor for ferrienterochelin and colicins.	0.521
SIS95672.1	SIS86966.1	SAMN05421785_104140	SAMN05421785_103321	Aspartyl protease.	Por secretion system C-terminal sorting domain-containing protein.	0.522
SIT08983.1	SIS86966.1	SAMN05421785_106195	SAMN05421785_103321	Por secretion system C-terminal sorting domain-containing protein; Belongs to the peptidase S8 family.	Por secretion system C-terminal sorting domain-containing protein.	0.468
SIT18347.1	SIS86966.1	SAMN05421785_10981	SAMN05421785_103321	Peptidase family S41.	Por secretion system C-terminal sorting domain-containing protein.	0.449
SIT21419.1	SIS86966.1	SAMN05421785_11140	SAMN05421785_103321	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.447
SIT24282.1	SIS86966.1	SAMN05421785_11460	SAMN05421785_103321	C-terminal processing protease CtpA/Prc, contains a PDZ domain.	Por secretion system C-terminal sorting domain-containing protein.	0.449
SIT25064.1	SIS86966.1	SAMN05421785_11566	SAMN05421785_103321	Outer membrane receptor for ferrienterochelin and colicins.	Por secretion system C-terminal sorting domain-containing protein.	0.521

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About