Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIS95174.1 | SIS95189.1 | SAMN05421785_104100 | SAMN05421785_104101 | TatD DNase family protein. | Protein of unknown function. | 0.773 |
SIS95174.1 | SIS95203.1 | SAMN05421785_104100 | SAMN05421785_104102 | TatD DNase family protein. | Hypothetical protein. | 0.773 |
SIS95174.1 | SIS95215.1 | SAMN05421785_104100 | SAMN05421785_104103 | TatD DNase family protein. | GSCFA family protein. | 0.785 |
SIS95174.1 | SIS95230.1 | SAMN05421785_104100 | SAMN05421785_104104 | TatD DNase family protein. | Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family. | 0.597 |
SIS95174.1 | gltX | SAMN05421785_104100 | SAMN05421785_1027 | TatD DNase family protein. | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.517 |
SIS95174.1 | lepA | SAMN05421785_104100 | SAMN05421785_10361 | TatD DNase family protein. | GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | 0.464 |
SIS95174.1 | lolD | SAMN05421785_104100 | SAMN05421785_101519 | TatD DNase family protein. | Lipoprotein-releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family. | 0.432 |
SIS95174.1 | metG | SAMN05421785_104100 | SAMN05421785_106148 | TatD DNase family protein. | methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. | 0.420 |
SIS95174.1 | secD | SAMN05421785_104100 | SAMN05421785_106212 | TatD DNase family protein. | Protein translocase subunit secF /protein translocase subunit secD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily. | 0.480 |
SIS95174.1 | valS | SAMN05421785_104100 | SAMN05421785_11720 | TatD DNase family protein. | valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.405 |
SIS95189.1 | SIS95174.1 | SAMN05421785_104101 | SAMN05421785_104100 | Protein of unknown function. | TatD DNase family protein. | 0.773 |
SIS95189.1 | SIS95203.1 | SAMN05421785_104101 | SAMN05421785_104102 | Protein of unknown function. | Hypothetical protein. | 0.773 |
SIS95189.1 | SIS95215.1 | SAMN05421785_104101 | SAMN05421785_104103 | Protein of unknown function. | GSCFA family protein. | 0.773 |
SIS95189.1 | SIS95230.1 | SAMN05421785_104101 | SAMN05421785_104104 | Protein of unknown function. | Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family. | 0.548 |
SIS95203.1 | SIS95174.1 | SAMN05421785_104102 | SAMN05421785_104100 | Hypothetical protein. | TatD DNase family protein. | 0.773 |
SIS95203.1 | SIS95189.1 | SAMN05421785_104102 | SAMN05421785_104101 | Hypothetical protein. | Protein of unknown function. | 0.773 |
SIS95203.1 | SIS95215.1 | SAMN05421785_104102 | SAMN05421785_104103 | Hypothetical protein. | GSCFA family protein. | 0.773 |
SIS95203.1 | SIS95230.1 | SAMN05421785_104102 | SAMN05421785_104104 | Hypothetical protein. | Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family. | 0.617 |
SIS95215.1 | SIS95174.1 | SAMN05421785_104103 | SAMN05421785_104100 | GSCFA family protein. | TatD DNase family protein. | 0.785 |
SIS95215.1 | SIS95189.1 | SAMN05421785_104103 | SAMN05421785_104101 | GSCFA family protein. | Protein of unknown function. | 0.773 |
page 1 of 3