Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
AQQ59162.1FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)    
Predicted Functional Partners:
AQQ59159.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.846
AQQ59161.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
0.807
AQQ59160.1
Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.756
AQQ59158.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.662
csiD
Protein CsiD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.485
Your Current Organism:
Helicobacter bilis
NCBI taxonomy Id: 37372
Other names: ATCC 51630, CCUG 38995 B, CIP 104752, Flexispira rappini species 8, Flexispira taxon 9, H. bilis, Helicobacter sp. ATCC 43879, Helicobacter sp. ATCC 49314, Helicobacter sp. ATCC 49317, Helicobacter sp. ATCC 49320, strain Hb1
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