STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQQ59408.1ATPase P; Derived by automated computational analysis using gene prediction method: Protein Homology. (904 aa)    
Predicted Functional Partners:
AQQ59563.1
ATPase P; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.918
ccoG
4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.582
bamA
Outer membrane protein assembly complex, YaeT protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.568
ccoO
Peptidase S13; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.554
ccoN
Cbb3-type cytochrome c oxidase subunit I; CcoN; FixN; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family.
 
   
 0.550
rimM
Ribosome maturation factor rimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
  
    0.482
rpsP
30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS16 family.
       0.475
AQQ59410.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.475
AQQ59112.1
Cb-type cytochrome C oxidase subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
   
 0.453
ribD
Riboflavin biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.440
Your Current Organism:
Helicobacter bilis
NCBI taxonomy Id: 37372
Other names: ATCC 51630, CCUG 38995 B, CIP 104752, Flexispira rappini species 8, Flexispira taxon 9, H. bilis, Helicobacter sp. ATCC 43879, Helicobacter sp. ATCC 49314, Helicobacter sp. ATCC 49317, Helicobacter sp. ATCC 49320, strain Hb1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.