Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AQQ59391.1 | AQQ59602.1 | XJ32_04010 | XJ32_05315 | ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. | Flagellar basal body rod protein FlgG; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.525 |
| AQQ59391.1 | AQQ59603.1 | XJ32_04010 | XJ32_05320 | ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.835 |
| AQQ59391.1 | AQQ59618.1 | XJ32_04010 | XJ32_05405 | ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. | Flagellin B; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.577 |
| AQQ59391.1 | AQQ60759.1 | XJ32_04010 | XJ32_09815 | ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.819 |
| AQQ59391.1 | rpoB | XJ32_04010 | XJ32_04200 | ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit beta/beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.546 |
| AQQ59602.1 | AQQ59391.1 | XJ32_05315 | XJ32_04010 | Flagellar basal body rod protein FlgG; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.525 |
| AQQ59602.1 | AQQ59603.1 | XJ32_05315 | XJ32_05320 | Flagellar basal body rod protein FlgG; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.536 |
| AQQ59602.1 | AQQ59618.1 | XJ32_05315 | XJ32_05405 | Flagellar basal body rod protein FlgG; Derived by automated computational analysis using gene prediction method: Protein Homology. | Flagellin B; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.797 |
| AQQ59603.1 | AQQ59391.1 | XJ32_05320 | XJ32_04010 | RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.835 |
| AQQ59603.1 | AQQ59602.1 | XJ32_05320 | XJ32_05315 | RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Flagellar basal body rod protein FlgG; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.536 |
| AQQ59603.1 | AQQ59618.1 | XJ32_05320 | XJ32_05405 | RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Flagellin B; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.595 |
| AQQ59603.1 | AQQ60759.1 | XJ32_05320 | XJ32_09815 | RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.666 |
| AQQ59603.1 | csrA | XJ32_05320 | XJ32_02145 | RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.618 |
| AQQ59603.1 | lepB | XJ32_05320 | XJ32_09175 | RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Signal peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S26 family. | 0.567 |
| AQQ59603.1 | rpoA | XJ32_05320 | XJ32_01625 | RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.905 |
| AQQ59603.1 | rpoB | XJ32_05320 | XJ32_04200 | RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit beta/beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.941 |
| AQQ59603.1 | rpoD | XJ32_05320 | XJ32_01080 | RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.530 |
| AQQ59603.1 | rpoZ | XJ32_05320 | XJ32_01485 | RNA polymerase sigma54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.889 |
| AQQ59618.1 | AQQ59391.1 | XJ32_05405 | XJ32_04010 | Flagellin B; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.577 |
| AQQ59618.1 | AQQ59602.1 | XJ32_05405 | XJ32_05315 | Flagellin B; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Flagellar basal body rod protein FlgG; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.797 |
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