Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AQQ59933.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (879 aa)    
Predicted Functional Partners:
AQQ60578.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.693
radA
DNA repair protein RadA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.685
AQQ60616.1
ATP-dependent nuclease subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily.
 
   
 0.661
bamD
Competence protein ComL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.646
AQQ59741.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.632
AQQ59718.1
Transformation system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.620
mreC
Rod shape-determining protein MreC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.617
AQQ59500.1
Purine nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.613
AQQ59277.1
CvpA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.612
AQQ60218.1
Cytochrome c-type biogenesis protein CcsB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.609
Your Current Organism:
Helicobacter bilis
NCBI taxonomy Id: 37372
Other names: ATCC 51630, CCUG 38995 B, CIP 104752, Flexispira rappini species 8, Flexispira taxon 9, H. bilis, Helicobacter sp. ATCC 43879, Helicobacter sp. ATCC 49314, Helicobacter sp. ATCC 49317, Helicobacter sp. ATCC 49320, strain Hb1
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