STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACL70517.1PFAM: Surface antigen variable number repeat; Surface antigen variable number repeat; Surface antigen variable number repeat; Surface antigen. (553 aa)    
Predicted Functional Partners:
ACL70516.1
Outer membrane chaperone Skp (OmpH); PFAM: Outer membrane protein (OmpH-like).
 
  
 0.964
lpxD
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
 
  
 0.915
ACL70521.1
Hypothetical protein.
 
  
 0.883
ACL69773.1
PFAM: Patatin-like phospholipase.
 
 
  
 0.882
ACL70520.1
Uncharacterized protein conserved in bacteria; PFAM: Family of unknown function (DUF490); YabP family.
 
   
 0.862
lpxA
acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
  
 0.857
ACL70510.1
PFAM: Predicted permease YjgP/YjgQ family.
 
  
 0.841
ACL70499.1
PFAM: ABC transporter.
 
  
 0.818
ACL70498.1
PFAM: Predicted permease YjgP/YjgQ family.
 
     0.782
ACL70514.1
Outer membrane chaperone Skp (OmpH); PFAM: Outer membrane protein (OmpH-like).
  
  
 0.782
Your Current Organism:
Halothermothrix orenii
NCBI taxonomy Id: 373903
Other names: H. orenii H 168, Halothermothrix orenii H 168, Halothermothrix orenii str. H 168, Halothermothrix orenii strain H 168
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.