STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY52756.1WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat. (1739 aa)    
Predicted Functional Partners:
AFY52755.1
PFAM: KAP family P-loop domain.
     0.921
AFY54754.1
DNA/RNA helicase, superfamily II, SNF2 family; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain.
  
 
 0.776
AFY53907.1
Hypothetical protein.
  
     0.771
AFY57392.1
Dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis; PFAM: ThiF family.
   
 0.755
AFY53540.1
PFAM: KAP family P-loop domain.
 
     0.583
AFY56430.1
Putative NTPase (NACHT family); PFAM: PBS lyase HEAT-like repeat; NACHT domain.
 
    0.516
AFY58085.1
ATPase; PFAM: Archaeal ATPase.
 
     0.484
AFY56869.1
Flp pilus assembly protein TadD; PFAM: Tetratricopeptide repeat; NB-ARC domain.
  
 
   0.459
AFY57449.1
Flp pilus assembly protein TadD; PFAM: Tetratricopeptide repeat.
  
 
   0.442
AFY53828.1
TPR repeat-containing protein; PFAM: Tetratricopeptide repeat; NB-ARC domain.
  
 
   0.408
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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