STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY52872.1Hypothetical protein. (290 aa)    
Predicted Functional Partners:
AFY53901.1
PFAM: Sucrose-6F-phosphate phosphohydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB.
  
    0.612
AFY55978.1
Hypothetical protein.
  
     0.490
AFY58750.1
Hypothetical protein.
  
     0.471
AFY52871.1
PAS domain S-box; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
   
   0.467
AFY55793.1
Putative Zn-dependent hydrolase of beta-lactamase fold protein.
  
   
 0.466
AFY53017.1
PFAM: FAD dependent oxidoreductase; TIGRFAM: geranylgeranyl reductase family.
 
     0.464
AFY56915.1
ABC-type phosphate/phosphonate transport system, periplasmic component.
  
    0.454
AFY53795.1
Hypothetical protein.
  
     0.451
AFY52711.1
Uncharacterized conserved small protein; PFAM: Protein of unknown function (DUF2288).
  
     0.445
AFY58860.1
Ferredoxin; PFAM: Helix-turn-helix.
 
     0.440
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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