STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY52984.1Hypothetical protein. (259 aa)    
Predicted Functional Partners:
AFY52808.1
PFAM: Phosphotransferase enzyme family.
 
     0.763
AFY58023.1
Transposase.
  
     0.763
AFY52678.1
Putative aminoglycoside phosphotransferase; PFAM: Phosphotransferase enzyme family.
 
     0.748
AFY52986.1
Multidrug resistance efflux pump; PFAM: HlyD family secretion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family.
  
     0.740
AFY52807.1
Hypothetical protein.
 
     0.731
AFY55908.1
Multidrug resistance efflux pump; PFAM: HlyD family secretion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family.
  
     0.731
AFY52969.1
Bacteriocin-processing peptidase; PFAM: ABC transporter transmembrane region; ABC transporter; Peptidase C39 family; Cyclic nucleotide-binding domain; TIGRFAM: ABC-type bacteriocin transporter; type I secretion system ABC transporter, HlyB family.
 
     0.727
AFY52987.1
ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain; PFAM: ABC transporter transmembrane region; ABC transporter; Peptidase C39 family; Cyclic nucleotide-binding domain; TIGRFAM: ABC-type bacteriocin transporter; type I secretion system ABC transporter, HlyB family.
  
     0.721
AFY52968.1
Multidrug resistance efflux pump; PFAM: HlyD family secretion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family.
  
     0.717
AFY55907.1
ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain; PFAM: Peptidase C39 family; ABC transporter; ABC transporter transmembrane region; Cyclic nucleotide-binding domain; TIGRFAM: ABC-type bacteriocin transporter; type I secretion system ABC transporter, HlyB family.
  
     0.714
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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