STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY53006.1Hypothetical protein. (173 aa)    
Predicted Functional Partners:
AFY56146.1
DNA-directed RNA polymerase specialized sigma subunit, sigma24; PFAM: Sigma-70, region 4; Tetratricopeptide repeat; NB-ARC domain.
  
     0.736
AFY55276.1
NB-ARC domain-containing protein; PFAM: NB-ARC domain.
  
     0.715
AFY53008.1
NB-ARC domain-containing protein; PFAM: NB-ARC domain.
  
     0.713
AFY57627.1
Transcriptional regulator with NB-ARC domain; PFAM: NB-ARC domain.
  
     0.671
AFY53113.1
PFAM: Acetyltransferase (GNAT) family.
  
     0.632
AFY58145.1
PFAM: BNR/Asp-box repeat.
  
     0.589
AFY56415.1
PFAM: Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
  
     0.442
AFY55828.1
PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; TIGRFAM: heavy metal sensor kinase.
  
     0.429
AFY53005.1
Hypothetical protein.
       0.408
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.