STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY53099.1PFAM: Protein kinase domain; Ycf66 protein N-terminus. (418 aa)    
Predicted Functional Partners:
AFY57898.1
PFAM: Protein phosphatase 2C.
  
     0.774
AFY53672.1
PFAM: Protein phosphatase 2C.
  
     0.769
AFY56303.1
PFAM: Protein phosphatase 2C.
  
     0.769
AFY55087.1
PFAM: Protein phosphatase 2C.
  
     0.749
AFY53098.1
Hypothetical protein.
       0.620
AFY57121.1
WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat.
 
      0.507
AFY53097.1
NmrA-like family protein; PFAM: Complex I intermediate-associated protein 30 (CIA30); NmrA-like family.
       0.473
AFY57336.1
WD40 repeat-containing protein; PFAM: Pentapeptide repeats (8 copies); WD domain, G-beta repeat.
 
      0.449
AFY53100.1
Hypothetical protein.
       0.417
AFY53096.1
Hypothetical protein.
       0.405
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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