STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY53534.1Hypothetical protein. (314 aa)    
Predicted Functional Partners:
AFY57034.1
Hypothetical protein; PFAM: Domain of Unknown Function (DUF748); Family of unknown function (DUF490).
  
     0.764
AFY53011.1
Hypothetical protein; Manually curated.
  
     0.762
AFY54108.1
PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
  
     0.756
AFY55786.1
Hypothetical protein.
  
     0.754
AFY54162.1
PFAM: Tic22-like family.
  
     0.733
AFY57930.1
Hypothetical protein.
  
     0.731
AFY56985.1
Hypothetical protein.
  
     0.729
AFY53152.1
Hypothetical protein.
  
     0.726
AFY53706.1
Hypothetical protein.
  
     0.726
AFY53953.1
RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4.
  
     0.726
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.