STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY53931.1ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter; FHA domain; ABC-2 type transporter. (809 aa)    
Predicted Functional Partners:
AFY58680.1
Cyanobactin maturation protease, PatA/PatG family; PFAM: Nitroreductase family; Subtilase family; TIGRFAM: SagB-type dehydrogenase domain; cyanobactin maturation protease, PatA/PatG family.
 
 
 0.864
AFY58676.1
PFAM: YcaO-like family; TIGRFAM: uncharacterized domain; bacteriocin biosynthesis cyclodehydratase domain; bacteriocin biosynthesis docking scaffold, SagD family.
  
  
 0.806
AFY55502.1
Hypothetical protein.
 
  
 0.731
AFY57139.1
Hypothetical protein.
  
 
 0.704
AFY59152.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
 
 0.704
AFY52907.1
PFAM: Nitroreductase family; TIGRFAM: SagB-type dehydrogenase domain.
  
  
 0.695
AFY58393.1
PFAM: Nitroreductase family.
  
  
 0.695
AFY58437.1
Trypsin-like serine protease with C-terminal PDZ domain; PFAM: Trypsin; Tetratricopeptide repeat.
 
 
 0.660
AFY58341.1
Hypothetical protein.
  
 
 0.650
AFY55347.1
PFAM: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); e3 binding domain; Biotin-requiring enzyme; TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form.
   
 
 0.629
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.