STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY54257.1PFAM: ATPase family associated with various cellular activities (AAA). (675 aa)    
Predicted Functional Partners:
AFY54255.1
Hypothetical protein.
 
     0.875
AFY54252.1
PFAM: Phage tail sheath protein.
     0.816
AFY54251.1
PFAM: Phage tail sheath protein.
     0.812
AFY54245.1
Phage protein D; PFAM: Phage late control gene D protein (GPD).
 
     0.806
AFY54246.1
LysM domain-containing protein; PFAM: LysM domain.
 
   
 0.805
AFY54249.1
Hypothetical protein.
 
     0.805
AFY54250.1
PFAM: T4-like virus tail tube protein gp19; TIGRFAM: conserved hypothetical phage tail region protein.
 
     0.803
AFY54243.1
Phage baseplate assembly protein W; PFAM: Gene 25-like lysozyme.
 
     0.801
AFY54244.1
Hypothetical protein; PFAM: Phage-related baseplate assembly protein.
 
     0.801
AFY54248.1
PFAM: T4-like virus tail tube protein gp19; TIGRFAM: conserved hypothetical phage tail region protein.
 
     0.800
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.