STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY54276.1Hypothetical protein. (266 aa)    
Predicted Functional Partners:
AFY54277.1
PFAM: Bacterial conjugation TrbI-like protein.
       0.784
AFY54275.1
Hypothetical protein.
       0.783
AFY54278.1
Hypothetical protein.
       0.739
AFY54274.1
Hypothetical protein.
       0.701
AFY54279.1
Hypothetical protein.
       0.616
AFY54281.1
Type IV secretory pathway, VirD4 component; PFAM: Type IV secretion-system coupling protein DNA-binding domain.
       0.616
AFY54280.1
Hypothetical protein.
       0.615
AFY54272.1
Hypothetical protein.
       0.613
AFY54273.1
Hypothetical protein.
       0.613
AFY54282.1
Hypothetical protein.
       0.599
Your Current Organism:
Rivularia sp. PCC7116
NCBI taxonomy Id: 373994
Other names: Calothrix sp. ATCC 29111, Calothrix sp. PCC 7116, R. sp. PCC 7116, Rivularia sp. LIP, Rivularia sp. PCC 7116
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.